Organic synthesis: designing synthetic routes, identifying organic compounds

Organic Chemistry – Synthesis and Identification (Cambridge International AS & A Level 9701)

Learning Objectives & Assessment Objectives

  • Design synthetic routes (forward and retrosynthetic) for given target molecules.
  • Identify organic compounds using functional‑group tests, physical data and spectroscopic techniques (IR, ¹H NMR, MS).
  • Recall key reagents and the mechanisms by which they operate.
  • Apply IUPAC nomenclature and recognise structural, geometric and (where required) stereoisomerism.

Assessment Objectives (AO)

AOWhat is assessed
AO1Knowledge and understanding of concepts, terminology and factual information (e.g., functional‑group tables, reaction types, naming rules).
AO2Application of knowledge to solve problems – design synthesis routes, predict products, choose appropriate reagents.
AO3Analysis and evaluation – interpret spectroscopic data, critique synthetic strategies (step‑economy, protecting‑group use, safety, cost).

1. Foundations of Organic Synthesis

Two complementary approaches are used throughout the syllabus:

  1. Forward synthesis – start from readily available reagents and apply a sequence of reactions to obtain the target.
  2. Retrosynthetic analysis – work backwards from the target, “disconnect” strategic bonds and propose simpler, commercially available precursors.

Effective planning must consider:

  • Functional‑group compatibility and protecting‑group requirements.
  • Reagent availability, cost, safety and environmental impact.
  • Reaction conditions (temperature, solvent, catalyst).
  • Overall yield, step‑economy, atom‑economy and scalability.

2. Functional Groups, Nomenclature & Hybridisation

2.1 Functional‑Group Table (required for the syllabus)

GroupGeneral FormulaIUPAC Example (≤6 C)Common Name
AlkaneCnH2n+2methane, ethane, propaneParaffin
AlkeneCnH2nethene, propene, 2‑buteneOlefin
AlkyneCnH2n‑2ethyne, propyne, 2‑butyneAcetylene
AlcoholR–OHethanol, 2‑propanol, 2‑methyl‑1‑propanolHydroxy compound
PhenolAr–OHphenol, p‑cresolAr‑hydroxy
AldehydeR–CHOethanal, propanal, 2‑methylpropanalFormyl compound
KetoneR–CO–R′propan‑2‑one (acetone), 2‑butanoneCarbonyl (non‑aldehyde)
Carboxylic acidR–COOHethanoic acid, propanoic acid, 2‑methylpropanoic acidAcid
EsterR–COO–R′ethyl acetate, methyl benzoateAcyl‑alkyl ether
AmideR–CONH2ethanamide (acetamide), 2‑methyl‑propionamideCarboxamide
Acyl chlorideR–COClacetyl chlorideAcid chloride
AminesR–NH2 (primary)ethanamine, 2‑methyl‑1‑propanamineAmine
HalogenoalkaneR–X (X = Cl, Br, I)chloroethane, 2‑bromopropaneAlkyl halide

2.2 IUPAC Naming Conventions (syllabus requirement)

  • Priority of functional groups – carboxylic acids > esters > amides > acid chlorides > aldehydes > ketones > alcohols > phenols > amines > alkenes > alkynes > alkanes.
  • Numbering – give the longest chain containing the principal group; assign the lowest possible locants to that group.
  • Substituent notation – replace the terminal “‑ane” of the parent hydrocarbon with “‑yl” (e.g., methyl, ethyl). “‑ylidene” denotes a doubly‑bonded substituent (e.g., methylene = “‑ylidene”).
  • Multiple bonds – indicate position(s) and type (‑ene, ‑yne). When a multiple bond appears as a substituent use “‑ene‑yl” or “‑yne‑yl”.
  • Examples:
    • CH₃CH₂CH₂COOH → propanoic acid
    • CH₃CH₂CH₂CH₂Cl → 1‑chlorobutane
    • CH₃CH₂CH=CH₂ → but‑1‑ene
    • CH₃CH₂C(=O)Cl → ethanoyl chloride

2.3 Hybridisation, σ/π Bonds & Geometry

HybridisationGeometryBond Angles (°)Typical Bonds
spLinear180Triple bond (σ + 2π), terminal alkyne C≡C, nitrile C≡N
sp²Trigonal planar120C=C, C=O, aromatic C‑C
sp³Tetrahedral109.5All single bonds (σ) in alkanes, alcohols, amines, etc.
sp³dTrigonal‑bipyramidal90 / 120PCl₅, SF₄ (hypervalent)
sp³d²Octahedral90SF₆, [Co(NH₃)₆]³⁺

2.4 Isomerism (syllabus requirement)

  • Structural (constitutional) isomers – differ in connectivity (e.g., n‑butanol vs. 2‑methyl‑1‑propanol).
  • Geometric (cis/trans) isomers – arise from restricted rotation about C=C; use cis/trans or E/Z notation (CIP rules). The Cambridge syllabus accepts “cis/trans”.
  • Optical isomerism – chiral centres give enantiomers; not examined at AS level but may appear in A‑Level questions.
  • Meso compounds – not required for the Cambridge syllabus; a brief note is included to avoid confusion.

3. Core Syllabus Topics

3.1 Hydrocarbons (Alkanes, Alkenes, Alkynes)

  • General formulas: CnH2n+2 (alkanes), CnH2n (alkenes), CnH2n‑2 (alkynes).
  • Physical properties: non‑polar, low boiling points, insoluble in water, combustible.
  • Key reactions:
    • Combustion: CnH2n+2 + (3n+½) O₂ → n CO₂ + (n+1) H₂O.
    • Free‑radical halogenation (alkanes) – Cl₂ or Br₂, hv; regio‑selectivity follows the stability of the resulting radical.
    • Electrophilic addition (alkenes & alkynes) – HBr, H₂O, H₂, halogens, etc.; Markovnikov vs. anti‑Markovnikov control.
    • Hydrogenation (alkenes/alkynes) – H₂, Pd/C, Pt, Ni; converts multiple bonds to single bonds.
    • Cracking (thermal or catalytic) – breaks C–C bonds to give shorter alkanes/alkenes.
    • Polymerisation (addition) – e.g., ethene → polyethylene (radical or Ziegler‑Natta catalysis).

3.2 Halogen Compounds (Halogenoalkanes)

  • Classification: primary, secondary, tertiary; allylic and benzylic halides are especially reactive.
  • Synthesis:
    • From alcohols: R–OH + HX (conc.) → R–X + H₂O.
    • From alkanes: free‑radical halogenation (Cl₂/Br₂, hv).
  • Reactivity trends – C–X bond strength: C–I > C–Br > C–Cl > C–F; thus reactivity follows I > Br > Cl > F.
  • Key reactions:
    • SN1 (tertiary, allylic, benzylic) – carbocation intermediate; polar protic solvent.
    • SN2 (primary, methyl) – concerted backside attack; polar aprotic solvent.
    • E1 (tertiary, weak base) – carbocation intermediate; often competes with SN1.
    • E2 (strong base, anti‑periplanar geometry) – concerted elimination; favoured for primary/secondary halides with strong bases.

3.3 Hydroxy Compounds (Alcohols & Phenols)

  • Physical properties – hydrogen bonding leads to higher boiling points; soluble in water if ≤3 carbons (alcohols) or if phenolic OH is present.
  • Preparation:
    • Hydration of alkenes (acid‑catalysed) – e.g., ethene + H₂O → ethanol.
    • Reduction of carbonyls (NaBH₄, LiAlH₄).
    • From halogenoalkanes – SN2 with OH⁻ (primary) or via Grignard reagent + water.
  • Typical reactions:
    • Oxidation – primary alcohol → aldehyde (PCC) → carboxylic acid (KMnO₄, Jones); secondary alcohol → ketone (CrO₃/H₂SO₄).
    • Substitution – conversion to halides (HX), tosylates (TsCl) or mesylates (MsCl) for further SN2/E2 steps.
    • Dehydration – strong acid (H₂SO₄) or acid catalyst (Al₂O₃) gives alkenes (E1 mechanism).
    • Formation of ethers – Williamson ether synthesis (R‑X + RO⁻ → R‑OR).
    • Phenols – undergo electrophilic aromatic substitution (activating, ortho/para directing).
  • Diagnostic tests:
    • Lucas test – tertiary alcohols react instantly with conc. HCl/ZnCl₂, secondary slower, primary no reaction.
    • Chromic acid test – primary & secondary alcohols oxidise (colour change from orange to green).

3.4 Carbonyl Compounds (Aldehydes & Ketones)

  • General formula – R–CHO (aldehyde) or R–CO–R′ (ketone).
  • Preparation:
    • Oxidation of primary alcohols (PCC, Jones) → aldehydes or acids.
    • Oxidation of secondary alcohols → ketones.
    • Friedel‑Crafts acylation – aromatic ring + acyl chloride/AlCl₃ → aryl ketone.
  • Reactions:
    • Nucleophilic addition – Grignard or organolithium reagents give alcohols; NaBH₄/LiAlH₄ give alcohols (reduction).
    • Acetal formation – aldehyde/ketone + 2 ROH + H⁺ (protecting group).
    • Cyanohydrin formation – NaCN + H⁺ → R‑CH(OH)‑CN.
    • Oxidation – aldehydes → carboxylic acids (Tollens, Fehling, KMnO₄).
  • Diagnostic tests:
    • Tollens’ reagent – silver mirror for aldehydes.
    • Fehling’s solution – brick‑red precipitate for aldehydes.
    • 2,4‑DNP test – yellow precipitate for both aldehydes and ketones.

3.5 Amines (Primary, Secondary, Tertiary)

  • Basicity – nitrogen lone pair accepts a proton; basicity decreases from primary > secondary > tertiary due to steric hindrance and solvation.
  • Preparation:
    • Reduction of nitro compounds (Sn/HCl, Fe/HCl, H₂/Pd‑C).
    • Alkylation of ammonia (Gabriel synthesis) – KCN + 2‑bromoethanol → phthalimido‑ethyl → hydrazinolysis → primary amine.
    • Reductive amination – aldehyde/ketone + amine + NaBH₃CN.
  • Key reactions:
    • Nucleophilic substitution – amines act as nucleophiles (SN2) to give alkyl amines.
    • Acylation – amine + acyl chloride → amide (protecting group).
    • Diazotisation (primary aromatic amines) – NaNO₂/HCl at 0 °C → diazonium salt (used for Sandmeyer reactions).
  • Diagnostic tests:
    • Hinsberg test – primary amines give two layers (organic & aqueous), secondary give one, tertiary give none.
    • Acid‑base extraction – amines move to aqueous HCl layer.

3.6 Carboxylic Acids and Derivatives

  • Acid strength – pKₐ ≈ 4–5 for simple aliphatic acids; resonance stabilises the conjugate base.
  • Derivatives covered in the syllabus: esters, amides, acid chlorides, anhydrides.
  • Preparation:
    • Fischer esterification – RCOOH + ROH ⇌ ester + H₂O (conc. H₂SO₄, reflux).
    • Acid chloride – RCOOH + SOCl₂ (or PCl₅) → RCOCl + SO₂ + HCl.
    • Anhydride – acid chloride + carboxylic acid → anhydride + HCl.
    • Amide – acid chloride + amine → amide + HCl.
  • Reactions:
    • Acid‑base neutralisation – acid + base → salt + H₂O.
    • Reduction – LiAlH₄ reduces acids, esters, amides → alcohols (or amines from amides).
    • Hydrolysis – ester or amide + acid/base → carboxylic acid (or amine).
    • Decarboxylation – heating β‑keto acids or malonic esters gives CO₂ loss.
  • Diagnostic tests:
    • Carboxylic acid – turns litmus red; forms hydrogen‑bonded dimers (IR broad O‑H at 2500–3300 cm⁻¹).
    • Ester – characteristic IR C=O stretch at 1735–1750 cm⁻¹; pleasant fruity smell.

3.7 Aromatic Compounds

  • Benzene – planar, sp² hybridised, 6 π‑electrons (Hückel rule).
  • Substituent effects:
    • Activating groups (–OH, –NH₂, –OR) – ortho/para directors, increase reactivity.
    • Deactivating groups (–NO₂, –CF₃, –COOH) – meta directors, decrease reactivity.
  • Electrophilic aromatic substitution (EAS) – key steps: formation of σ‑complex → deprotonation → regeneration of aromaticity.
  • Typical EAS reactions:
    • Nitration – HNO₃/H₂SO₄ → nitrobenzene.
    • Sulphonation – SO₃/H₂SO₄ → benzenesulphonic acid.
    • Halogenation – Br₂/FeBr₃ → bromobenzene.
    • Friedel‑Crafts alkylation – R‑Cl/AlCl₃ (limited by poly‑alkylation).
    • Friedel‑Crafts acylation – RCOCl/AlCl₃ → aryl ketone (no poly‑acylation).

4. Reaction Mechanisms & Typical Transformations

4.1 Electrophilic Addition to Alkenes & Alkynes

General pattern: π‑bond attacks electrophile → carbocation (or cyclic bromonium) intermediate → nucleophile attacks.

  • Markovnikov rule – electrophile adds to the carbon bearing more hydrogens; nucleophile ends up on the more substituted carbon.
  • Example: HCl + prop‑1‑ene → 2‑chloropropane (major product).
  • Anti‑Markovnikov addition – e.g., HBr with peroxides proceeds via a radical chain mechanism giving the opposite regiochemistry.
  • Hydration (acid‑catalysed) – H₂O adds across C=C to give alcohols.
  • Halogen addition – Br₂ or Cl₂ adds to give vicinal dihalides (via bromonium/chloronium ion).

4.2 Electrophilic Aromatic Substitution (EAS)

Key steps: formation of an arenium ion (σ‑complex) → deprotonation → regeneration of aromaticity.

  • Typical reagents: NO₂⁺ (nitration), SO₃ (sulphonation), AlCl₃ + alkyl/ acyl halide (Friedel‑Crafts).
  • Directing effects:
    • Activating groups (–OH, –NH₂, –OR) → ortho/para.
    • Deactivating groups (–NO₂, –CF₃, –COOH) → meta.

4.3 Nucleophilic Substitution (SN1 & SN2)

FeatureSN1SN2
Rate lawFirst order in substrate onlySecond order (substrate + nucleophile)
IntermediateCarbocation (stable tertiary > secondary > primary)None – concerted
SolventPolar protic (stabilises carbocation)Polar aprotic (enhances nucleophile)
Typical substrate3° alkyl halide, allylic/benzylic halide1° alkyl halide, methyl halide
StereochemistryRacemisation (planar carbocation)Inversion of configuration (Walden inversion)

4.4 Elimination (E1 & E2)

  • E1 – two‑step: ionisation → deprotonation. Favoured by weak bases, tertiary substrates, polar protic solvents.
  • E2 – concerted, requires a strong base and anti‑periplanar geometry. Favoured by primary or secondary substrates with strong bases (NaOEt, t‑BuOK).
  • Competition with substitution follows the substrate‑base rule (e.g., NaOH in ethanol → SN1/E1; NaOEt → SN2/E2).

4.5 Oxidation & Reduction of Carbonyl Compounds & Alcohols

ReagentTransformationNotes
NaBH₄Aldehyde/ketone → primary/secondary alcoholSelective; does not reduce esters, amides, acids.
LiAlH₄Ester, acid, amide → alcohol (or amine from amide)Strong, moisture‑sensitive; dry ether required.
KMnO₄ (cold, dilute)Alkene → syn‑diol; primary alcohol → aldehyde; secondary alcohol → ketoneCold conditions prevent over‑oxidation.
KMnO₄ (hot, conc.)Alkene → dicarboxylic acid; primary alcohol → carboxylic acid
CrO₃/H₂SO₄ (Jones)Secondary alcohol → ketone; primary alcohol → carboxylic acidStrong oxidiser; aqueous work‑up required.
PCC (pyridinium chlorochromate)Primary alcohol → aldehyde (no further oxidation)Mild, avoids over‑oxidation.

4.6 Esterification & Acyl‑Halide Formation

  • Fischer esterification – RCOOH + ROH ⇌ ester + H₂O (conc. H₂SO₄, reflux, removal of water by Dean‑Stark).
  • Acyl‑chloride preparation – RCOOH + SOCl₂ → RCOCl + SO₂ + HCl (pyridine often scavenges HCl).
  • Acyl chlorides react readily with:
    • Alcohols → esters (catalysed by base).
    • Amines → amides.
    • Water → carboxylic acid (hydrolysis).

4.7 Carbon‑Carbon Bond Formation

  • Grignard reagents (RMgX) – add to carbonyls (aldehydes → secondary alcohols; ketones → tertiary alcohols; esters → tertiary alcohol after two additions). Performed in dry ether, 0 °C → reflux.
  • Organolithium reagents (RLi) – stronger bases/nucleophiles; used when Grignard reagents are unsuitable (e.g., with acidic protons).
  • Friedel‑Crafts alkylation – AlCl₃‑catalysed addition of alkyl halides to activated aromatic rings (limited by poly‑alkylation).
  • Friedel‑Crafts acylation – AlCl₃‑catalysed addition of acyl chlorides to aromatic rings; gives aryl ketones and avoids poly‑substitution.
  • aldol condensation – enolate of aldehyde/ketone + carbonyl → β‑hydroxy carbonyl → dehydration → α,β‑unsaturated carbonyl.

5. Retrosynthetic Analysis – Systematic Approach

  1. Identify all functional groups and determine the principal group (highest IUPAC priority).
  2. Locate strategic C–C bonds that can be formed by a known reaction (e.g., carbonyl addition, EAS, Grignard addition, aldol condensation).
  3. “Disconnect” those bonds to generate simpler precursors that are commercially available or easily prepared.
  4. Check for protecting‑group requirements (only when a functional group would be incompatible with a planned step).
  5. Decide whether a linear or convergent route gives the best overall yield, step‑economy and safety profile.

Worked Example 1 – Synthesis of Isobutylbenzene (2‑Methyl‑1‑phenyl‑propane)

  1. Target analysis – aromatic ring bearing an isobutyl substituent.
  2. Key disconnection – C–C bond formed by Friedel‑Crafts alkylation (benzene + 2‑methyl‑1‑propyl halide).
  3. Retro‑steps
    • 2‑Methyl‑1‑propyl chloride ⇐ 2‑

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