Published by Patrick Mutisya · 14 days ago
To outline the Krebs cycle, emphasizing that oxaloacetate (4‑carbon) acts as an acceptor of the 2‑carbon fragment from acetyl‑CoA to form citrate (6‑carbon), and that citrate is regenerated to oxaloacetate through a series of enzymatic steps.
The net stoichiometry for one turn of the cycle is:
\$\text{Acetyl‑CoA} + 3\ \text{NAD}^+ + \text{FAD} + \text{GDP} + \text{P}i + \text{H}2\text{O} \rightarrow 2\ \text{CO}2 + 3\ \text{NADH} + \text{FADH}2 + \text{GTP} + \text{CoA\text{-}SH}\$
Enzyme: Citrate synthase.
\$\text{Oxaloacetate} + \text{Acetyl‑CoA} \xrightarrow{\text{citrate synthase}} \text{Citrate} + \text{CoA‑SH}\$
Enzyme: Aconitase (citrate ⇌ cis‑aconitate ⇌ isocitrate).
\$\text{Citrate} \rightleftharpoons \text{Isocitrate}\$
Enzyme: Isocitrate dehydrogenase.
\$\text{Isocitrate} + \text{NAD}^+ \rightarrow \alpha\text{-ketoglutarate} + \text{CO}_2 + \text{NADH}\$
Enzyme: α‑Ketoglutarate dehydrogenase complex.
\$\alpha\text{-ketoglutarate} + \text{NAD}^+ + \text{CoA‑SH} \rightarrow \text{Succinyl‑CoA} + \text{CO}_2 + \text{NADH}\$
Enzyme: Succinyl‑CoA synthetase.
\$\text{Succinyl‑CoA} + \text{GDP} + \text{P}_i \rightarrow \text{Succinate} + \text{GTP} + \text{CoA‑SH}\$
Enzyme: Succinate dehydrogenase (complex II of the electron‑transport chain).
\$\text{Succinate} + \text{FAD} \rightarrow \text{Fumarate} + \text{FADH}_2\$
Enzyme: Fumarase.
\$\text{Fumarate} + \text{H}_2\text{O} \rightarrow \text{Malate}\$
Enzyme: Malate dehydrogenase.
\$\text{Malate} + \text{NAD}^+ \rightarrow \text{Oxaloacetate} + \text{NADH}\$
| Step | Enzyme | Substrate → Product | Reduced Cofactor | ATP/GTP Produced |
|---|---|---|---|---|
| 1. Condensation | Citrate synthase | Oxaloacetate + Acetyl‑CoA → Citrate | – | – |
| 2. Isomerisation | Aconitase | Citrate → Isocitrate | – | – |
| 3. Oxidative decarboxylation | Isocitrate dehydrogenase | Isocitrate → α‑Ketoglutarate + CO₂ | 1 NADH | – |
| 4. Oxidative decarboxylation | α‑Ketoglutarate dehydrogenase | α‑Ketoglutarate → Succinyl‑CoA + CO₂ | 1 NADH | – |
| 5. Substrate‑level phosphorylation | Succinyl‑CoA synthetase | Succinyl‑CoA → Succinate | – | 1 GTP (≈ATP) |
| 6. Oxidation | Succinate dehydrogenase | Succinate → Fumarate | 1 FADH₂ | – |
| 7. Hydration | Fumarase | Fumarate → Malate | – | – |
| 8. Oxidation | Malate dehydrogenase | Malate → Oxaloacetate | 1 NADH | – |